Protein ZmGATA15 | |
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Information | |
TF Name: | ZmGATA15 |
Species: | Maize |
TF Family: | C2C2-GATA |
Gene Name(Synonym): | GATA15 |
Uniprot ID: | A0A1D6PDQ1 |
Subgenome: | 1 |
ZmGATA15 is a protein in the C2C2-GATA family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.
Overview of domains present in v5 transcripts | |
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PF00320 | |
Zm00001eb240100_T002 | |
Zm00001eb240100_T001 |
Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
---|---|---|---|---|---|
Zm00001d016361 | DAPseq | sequence | fimo | position | |
Zm00001d016361 | DAPseq | sequence | fimo | position | |
Zm00001d016361 | ChIPseq | sequence | fimo | position | |
Zm00001d016361 | PChIPseq | sequence | fimo | position |
MSTVFMTQLPRTLRLMEGEQDQGLFPASTFHVAKDPPILFPFMITSPVHVDQLQGQSSYGDQHLGQHVLSESTQQFTDRT
MISGSEVFPRRPSPFGQTIQSIDGDMIQPSAYDPYDIVENQRTEGLSGGGWTVSSSSSSPPAKMKIMRKATSEYPEGGAA
RKPRRRAQAHQDESQLLTMQQQAMGVVVRVCSDCNTTKTPLWRSGPRGPKVNYQSLCNACGIRQRKARRAMVAAAAAAAA
SNGGAPPQAVSGVATQQQPKPKPARKEKRSDAADRSLPFKKRCKMVVVDHAAGAAAATATPEAAAARSTKDQADHVSGDK
QVVAPAAAMRSLDQSEIATPPPSAVSSFHAAFPADEITDAAMLLMTLSCGLVRS
MSTVFMTQLPRTLRLMEGEQDQGLFPASTFHVAKDPPILFPFMITSPVHVDQLQGQSSYGDQHLGQHVLSESTQQFTDRT
MISGSEVFPRRPSPFGQTIQSIDGDMIQPSAYDPYDIVENQRTEGLSGGGWTVSSSSSSPPAKMKIMRKATSEYPEGGAA
RKPRRRAQAHQDESQLLTMQQQAMGVVVRVCSDCNTTKTPLWRSGPRGPKVNYQSLCNACGIRQRKARRAMVAAAAAAAA
SNGGAPPQAVSGVATQQQPKPKPARKEKRSDAADRSLPFKKRCKMVVVDHAAGAAAATATPEAAAARSTKDQADHVSGDK
QVVAPAAAMRSLDQSEIATPPPSAVSSFHAAFPADEITDAAMLLMTLSCGLVRS
MSTVFMTQLPRTLRLMEGEQDQGLFPASTFHVAKDPPILFPFMITSPVHVDQLQGQSSYGDQHLGQHVLSESTQQFTDRT
MISGSEVFPRRPSPFGQTIQSIDGDMIQPSAYDPYDIVENQRTEGLSGGGWTVSSSSSSPPAKMKIMRKATSEYPEGGAA
RKPRRRAQAHQDESQLLTMQQQAMGVVVRVCSDCNTTKTPLWRSGPRGPKVNYQSLCNACGIRQRKARRAMVAAAAAAAA
SNGGAPPQAVSGVATQQQPKPKPARKEKRSDAADRSLPFKKRCKMVVVDHAAGAAAATATPEAAAARSTKDQADHVSGDK
QVVAPAAAMRSLDQSEIATPPPSAVSSFHAAFPADEITDAAMLLMTLSCGLVRS
MSTVFMTQLPRTLRLMEGEQDQGLFPASTFHVAKDPPILFPFMITSPVHVDQLQGQSSYGDQHLGQHVLSESTQQFTDRT
MISGSEVFPRRPSPFGQTIQSIDGDMIQPSAYDPYDIVENQRTEGLSGGGWTVSSSSSSPPAKMKIMRKATSEYPEGGAA
RKPRRRAQAHQDESQLLTMQQQAMGVVVRVCSDCNTTKTPLWRSGPRGPKVNYQSLCNACGIRQRKARRAMVAAAAAAAA
SNGGAPPQAVSGVATQQQPKPKPARKEKRSDAADRSLPFKKRCKMVVVDHAAGAAAATATPEAAAARSTKDQADHVSGDK
QVVAPAAAMRSLDQSEIATPPPSAVSSFHAAFPADEITDAAMLLMTLSCGLVRS
MSTVFMTQLPRTLRLMEGEQDQGLFPASTFHVAKDPPILFPFMITSPVHVDQLQGQSSYGDQHLGQHVLSESTQQFTDRT
MISGSEVFPRRPSPFGQTIQSIDGDMIQPSAYDPYDIVENQRTEGLSGGGWTVSSSSSSPPAKMKIMRKATSEYPEGGAA
RKPRRRAQAHQDESQLLTMQQQAMGVVVRVCSDCNTTKTPLWRSGPRGPKVNYQSLCNACGIRQRKARRAMVAAAAAAAA
SNGGAPPQAVSGVATQQQPKPKPARKEKRSDAADRSLPFKKRCKMVVVDHAAGAAAATATPEAAAARSTKDQADHVSGDK
QVVAPAAAMRSLDQSEIATPPPSAVSSFHAAFPADEITDAAMLLMTLSCGLVRS
Secondary Structure Color Code | |
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BEND | region with high backbone curvature without specific hydrogen bonding |
HELX_LH_PP_P | left-handed polyproline helix |
HELX_RH_3T_P | right-handed 3-10 helix |
HELX_RH_AL_P | right-handed alpha helix |
HELX_RH_PI_P | right-handed pi helix |
STRN | beta strand |
TURN_TY1_P | type I turn |
UNDETERMINED | no data available |
Domains Present | |
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PF00320 |
|
Hover here to show all domains |
TCTCGTAGTACATGTCTACCGTCTT...
TCTCGTAGTACATGTCTACCGTCTTCATGACCCAACTGCCGCGTACTCTCCGTCTAATGGAGGGAGAGCAGGATCAGGGACTCTTTCCGGCGTCGACCTTCCATGTCGCAAAGGACCCTCCAATCTTGTTCCCGTTCATGATCACCAGCCCCGTCCATGTAGATCAGCTCCAAGGGCAAAGCAGCTATGGTGATCAGCACTTGGGGCAGCATGTCTTGTCTGAATCTACTCAACAGTTCACCGATCGGACGATGATAAGTGGGTCAGAAGTCTTCCCTAGGCGGCCATCGCCGTTCGGGCAGACTATCCAAAGCATCGATGGTGATATGATCCAGCCATCTGCGTATGATCCATATGATATAGTGGAGAACCAGCGCACGGAAGGATTGAGCGGCGGCGGCTGGACAGTGTCGTCGTCCTCGTCGTCACCGCCGGCGAAGATGAAGATCATGCGCAAGGCGACGAGCGAGTATCCCGAGGGTGGAGCTGCAAGAAAGCCAAGGAGAAGAGCCCAAGCGCACCAAGACGAGAGCCAGCTACTGACGATGCAGCAGCAGGCTATGGGCGTCGTCGTTAGAGTGTGCTCCGACTGCAACACCACAAAGACCCCCTTGTGGAGGAGTGGTCCTCGTGGCCCCAAGGTGAATTACCAATCTCTCTGCAACGCATGTGGCATAAGGCAAAGGAAGGCGAGGCGGGCGATGGTGGCCGCGGCCGCGGCAGCTGCTGCCAGCAACGGAGGCGCGCCTCCACAAGCGGTGAGCGGCGTTGCCACCCAGCAGCAGCCGAAGCCGAAGCCGGCCAGGAAGGAGAAGAGGTCGGACGCCGCCGACCGGTCGCTGCCGTTCAAGAAGCGGTGCAAGATGGTGGTTGTCGATCACGCTGCCGGTGCAGCGGCAGCCACGGCGACGCCAGAGGCCGCAGCTGCTCGGAGTACCAAGGATCAAGCGGATCACGTCTCCGGCGACAAGCAGGTTGTTGCCCCTGCCGCCGCGATGAGGAGTCTGGATCAGAGCGAGATCGCCACTCCTCCTCCCTCGGCGGTGTCGTCGTTTCATGCTGCTTTCCCGGCCGACGAGATCACCGACGCCGCCATGCTGCTCATGACCCTGTCCTGTGGTCTCGTCCGCAGCTAGCTATATATGGCTAGCTTCTACCTGCTGAGAAATCCGTCGCTAGCAAGTGCAACCTGATTCTGCACCTAAAAAGTACCCTAGCTACATCTACCATATCTTAATATCGCTTGTGTTCTTTTGTTTGATTTTGTGTTGAGACCGGAAGAGGAAGGAGATCGCCAGGAGATATATAGAGTGATCACATGTCCAAGGCGGACGACAATAATTATGCGAAAAACTCTCGCTAGCCAGGAATTAGTCATTTTCTACCATAAGAGTGAG
MSTVFMTQLPRTLRLMEGEQDQGLFPASTFHVAKDPPILFPFMITSPVHVDQLQGQSSYGDQHLGQHVLSESTQQFTDRT
MISGSEVFPRRPSPFGQTIQSIDGDMIQPSAYDPYDIVENQRTEGLSGGGWTVSSSSSSPPAKMKIMRKATSEYPEGGAA
RKPRRRAQAHQDESQLLTMQQQAMGVVVRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMVAAAAAAAASNGG
APPQAVSGVATQQQPKPKPARKEKRSDAADRSLPFKKRCKMVVVDHAAGAAAATATPEAAAARSTKDQADHVSGDKQVVA
PAAAMRSLDQSEIATPPPSAVSSFHAAFPADEITDAAMLLMTLSCGLVRS
AGCTCTCTCTCTCTCTCTCTCTCTC...
AGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGCTCTCTTCTCTCTCGTAGTACATGTCTACCGTCTTCATGACCCAACTGCCGCGTACTCTCCGTCTAATGGAGGGAGAGCAGGATCAGGGACTCTTTCCGGCGTCGACCTTCCATGTCGCAAAGGACCCTCCAATCTTGTTCCCGTTCATGATCACCAGCCCCGTCCATGTAGATCAGCTCCAAGGGCAAAGCAGCTATGGTGATCAGCACTTGGGGCAGCATGTCTTGTCTGAATCTACTCAACAGTTCACCGATCGGACGATGATAAGTGGGTCAGAAGTCTTCCCTAGGCGGCCATCGCCGTTCGGGCAGACTATCCAAAGCATCGATGGTGATATGATCCAGCCATCTGCGTATGATCCATATGATATAGTGGAGAACCAGCGCACGGAAGGATTGAGCGGCGGCGGCTGGACAGTGTCGTCGTCCTCGTCGTCACCGCCGGCGAAGATGAAGATCATGCGCAAGGCGACGAGCGAGTATCCCGAGGGTGGAGCTGCAAGAAAGCCAAGGAGAAGAGCCCAAGCGCACCAAGACGAGAGCCAGCTACTGACGATGCAGCAGCAGGCTATGGGCGTCGTCGTTAGAGTGTGCTCCGACTGCAACACCACAAAGACCCCCTTGTGGAGGAGTGGTCCTCGTGGCCCCAAGTCTCTCTGCAACGCATGTGGCATAAGGCAAAGGAAGGCGAGGCGGGCGATGGTGGCCGCGGCCGCGGCAGCTGCTGCCAGCAACGGAGGCGCGCCTCCACAAGCGGTGAGCGGCGTTGCCACCCAGCAGCAGCCGAAGCCGAAGCCGGCCAGGAAGGAGAAGAGGTCGGACGCCGCCGACCGGTCGCTGCCGTTCAAGAAGCGGTGCAAGATGGTGGTTGTCGATCACGCTGCCGGTGCAGCGGCAGCCACGGCGACGCCAGAGGCCGCAGCTGCTCGGAGTACCAAGGATCAAGCGGATCACGTCTCCGGCGACAAGCAGGTTGTTGCCCCTGCCGCCGCGATGAGGAGTCTGGATCAGAGCGAGATCGCCACTCCTCCTCCCTCGGCGGTGTCGTCGTTTCATGCTGCTTTCCCGGCCGACGAGATCACCGACGCCGCCATGCTGCTCATGACCCTGTCCTGTGGTCTCGTCCGCAGCTAGCTATATATGGCT
MSTVFMTQLPRTLRLMEGEQDQGLFPASTFHVAKDPPILFPFMITSPVHVDQLQGQSSYGDQHLGQHVLSESTQQFTDRT
MISGSEVFPRRPSPFGQTIQSIDGDMIQPSAYDPYDIVENQRTEGLSGGGWTVSSSSSSPPAKMKIMRKATSEYPEGGAA
RKPRRRAQAHQDESQLLTMQQQAMGVVVRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMVAAAAAAAASNGG
APPQAVSGVATQQQPKPKPARKEKRSDAADRSLPFKKRCKMVVVDHAAGAAAATATPEAAAARSTKDQADHVSGDKQVVA
PAAAMRSLDQSEIATPPPSAVSSFHAAFPADEITDAAMLLMTLSCGLVRS
CATTCCGTGATCACCCTGGGCCCTT...
CATTCCGTGATCACCCTGGGCCCTTGTAAATTGCCCCTTCAACTGCACATCTCCTCTCCATCGTCTCCTTGAGGCTTATTATATGCATGCATCATCCCTGATCTCTTTCATCTCTTCCTTGCTAGCTACTTCTCTAGTTATAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGCTCTCTTCTCTCTCGTAGTACATGTCTACCGTCTTCATGACCCAACTGCCGCGTACTCTCCGTCTAATGGAGGGAGAGCAGGATCAGGGACTCTTTCCGGCGTCGACCTTCCATGTCGCAAAGGACCCTCCAATCTTGTTCCCGTTCATGATCACCAGCCCCGTCCATGTAGATCAGCTCCAAGGGCAAAGCAGCTATGGTGATCAGCACTTGGGGCAGCATGTCTTGTCTGAATCTACTCAACAGTTCACCGATCGGACGATGATAAGTGGGTCAGAAGTCTTCCCTAGGCGGCCATCGCCGTTCGGGCAGACTATCCAAAGCATCGATGGTGATATGATCCAGCCATCTGCGTATGATCCATATGATATAGTGGAGAACCAGCGCACGGAAGGATTGAGCGGCGGCGGCTGGACAGTGTCGTCGTCCTCGTCGTCACCGCCGGCGAAGATGAAGATCATGCGCAAGGCGACGAGCGAGTATCCCGAGGGTGGAGCTGCAAGAAAGCCAAGGAGAAGAGCCCAAGCGCACCAAGACGAGAGCCAGCTACTGACGATGCAGCAGCAGGCTATGGGCGTCGTCGTTAGAGTGTGCTCCGACTGCAACACCACAAAGACCCCCTTGTGGAGGAGTGGTCCTCGTGGCCCCAAGTCTCTCTGCAACGCATGTGGCATAAGGCAAAGGAAGGCGAGGCGGGCGATGGTGGCCGCGGCCGCGGCAGCTGCTGCCAGCAACGGAGGCGCGCCTCCACAAGCGGTGAGCGGCGTTGCCACCCAGCAGCAGCCGAAGCCGAAGCCGGCCAGGAAGGAGAAGAGGTCGGACGCCGCCGACCGGTCGCTGCCGTTCAAGAAGCGGTGCAAGATGGTGGTTGTCGATCACGCTGCCGGTGCAGCGGCAGCCACGGCGACGCCAGAGGCCGCAGCTGCTCGGAGTACCAAGGATCAAGCGGATCACGTCTCCGGCGACAAGCAGGTTGTTGCCCCTGCCGCCGCGATGAGGAGTCTGGATCAGAGCGAGATCGCCACTCCTCCTCCCTCGGCGGTGTCGTCGTTTCATGCTGCTTTCCCGGCCGACGAGATCACCGACGCCGCCATGCTGCTCATGACCCTGTCCTGTGGTCTCGTCCGCAGCTAGCTATATATGGCTAGCTTCTACCTGCTGAGAAATCCGTCGCTAGCAAGTGCAACCTGATTCTGCACCTAAAAAGTACCCTAGCTACATCTACCATATCTTAATATCGCTTGTGTTCTTTTGTTTGATTTTGTGTTGAGACCGGAAGAGGAAGGAGATCGCCAGGAGATATATAGAGTGATCACATGTCCAAGGCGGACGACAATAATTATGCGAAAAACTCTCGCTAGCCAGGAATTAGTCATTTTCTACCATAAGAGTGAGCCTTTTAATTTCACCCTTTTTCAGTTCTTCGGCTAATTATATATTCAAGTCCACTATATGCTATGTAACTTTCTTTGTTCCATAATTTGTATTACTTATATATGTTGTACTGGATCATCGGAGCTAAATAAAAATATTGAGGATATACAGTGATCGAG
MSTVFMTQLPRTLRLMEGEQDQGLFPASTFHVAKDPPILFPFMITSPVHVDQLQGQSSYGDQHLGQHVLSESTQQFTDRT
MISGSEVFPRRPSPFGQTIQSIDGDMIQPSAYDPYDIVENQRTEGLSGGGWTVSSSSSSPPAKMKIMRKATSEYPEGGAA
RKPRRRAQAHQDESQLLTMQQQAMGVVVRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMVAAAAAAAASNGG
APPQAVSGVATQQQPKPKPARKEKRSDAADRSLPFKKRCKMVVVDHAAGAAAATATPEAAAARSTKDQADHVSGDKQVVA
PAAAMRSLDQSEIATPPPSAVSSFHAAFPADEITDAAMLLMTLSCGLVRS
ATCTCTTCCTTGCTAGCTACTTCTC...
ATCTCTTCCTTGCTAGCTACTTCTCTAGTTATAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGCTCTCTTCTCTCTCGTAGTACATGTCTACCGTCTTCATGACCCAACTGCCGCGTACTCTCCGTCTAATGGAGGGAGAGCAGGATCAGGGACTCTTTCCGGCGTCGACCTTCCATGTCGCAAAGGACCCTCCAATCTTGTTCCCGTTCATGATCACCAGCCCCGTCCATGTAGATCAGCTCCAAGGGCAAAGCAGCTATGGTGATCAGCACTTGGGGCAGCATGTCTTGTCTGAATCTACTCAACAGTTCACCGATCGGACGATGATAAGTGGGTCAGAAGTCTTCCCTAGGCGGCCATCGCCGTTCGGGCAGACTATCCAAAGCATCGATGGTGATATGATCCAGCCATCTGCGTATGATCCATATGATATAGTGGAGAACCAGCGCACGGAAGGATTGAGCGGCGGCGGCTGGACAGTGTCGTCGTCCTCGTCGTCACCGCCGGCGAAGATGAAGATCATGCGCAAGGCGACGAGCGAGTATCCCGAGGGTGGAGCTGCAAGAAAGCCAAGGAGAAGAGCCCAAGCGCACCAAGACGAGAGCCAGCTACTGACGATGCAGCAGCAGGCTATGGGCGTCGTCGTTAGAGTGTGCTCCGACTGCAACACCACAAAGACCCCCTTGTGGAGGAGTGGTCCTCGTGGCCCCAAGTCTCTCTGCAACGCATGTGGCATAAGGCAAAGGAAGGCGAGGCGGGCGATGGTGGCCGCGGCCGCGGCAGCTGCTGCCAGCAACGGAGGCGCGCCTCCACAAGCGGTGAGCGGCGTTGCCACCCAGCAGCAGCCGAAGCCGAAGCCGGCCAGGAAGGAGAAGAGGTCGGACGCCGCCGACCGGTCGCTGCCGTTCAAGAAGCGGTGCAAGATGGTGGTTGTCGATCACGCTGCCGGTGCAGCGGCAGCCACGGCGACGCCAGAGGCCGCAGCTGCTCGGAGTACCAAGGATCAAGCGGATCACGTCTCCGGCGACAAGCAGGTTGTTGCCCCTGCCGCCGCGATGAGGAGTCTGGATCAGAGCGAGATCGCCACTCCTCCTCCCTCGGCGGTGTCGTCGTTTCATGCTGCTTTCCCGGCCGACGAGATCACCGACGCCGCCATGCTGCTCATGACCCTGTCCTGTGGTCTCGTCCGCAGCTAGCTATATATGGCTAGCTTCTACCTGCTGAGAAATCCGTCGCTAGCAAGTGCAACCTGATTCTGCACCTAAAAAGTACCCTAGCTACATCTACCATATCTTAATATCGCTTGTGTTCTTTTGTTTGATTTTGTGTTGAGACCGGAAGAGGAAGGAGATCGCCAGGAGATATATAGAGTGATCACATGTCCAAGGCGGACGACAATAATTATGCGAAAAACTCTCGCTAGCCAGGAATTAGTCATTTTCTACCATAAGAGTGAGCCTTTTAATTTCACCCTTTTTCAGTTCTTCGGCTAATTATATATTCAAGTCCACTATATGCTATGTAACTTTCTTTGTTCCATAATTTGTATTACTTATATATGTTGTACTGGATCATCGGAGCTAAATAAAAATATTGAG
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